Move Cephelepod into deprecated_compiler, create captian.sh to handle bootstrapping kraken from backup or from Cephelepod

deprecated_compiler/include/CollapseTransformation.h

@@ -0,0 +1,52 @@
+#ifndef COLLAPSETRANSFORMATION_H
+#define COLLAPSETRANSFORMATION_H
+
+#include <queue>
+#include <vector>
+
+#include "NodeTransformation.h"
+
+template<class T>
+class CollapseTransformation: public NodeTransformation<T,T> {
+	public:
+		CollapseTransformation(T toCollapse);
+		~CollapseTransformation();
+		virtual NodeTree<T>* transform(NodeTree<T>* from);
+
+	private:
+		T toCollapse;
+};
+
+#endif
+
+template<class T>
+CollapseTransformation<T>::CollapseTransformation(T toCollapse) {
+	this->toCollapse = toCollapse;
+}
+
+template<class T>
+CollapseTransformation<T>::~CollapseTransformation() {
+	//
+}
+
+template<class T>
+NodeTree<T>* CollapseTransformation<T>::transform(NodeTree<T>* from) {
+	std::queue<NodeTree<T>*> toProcess;
+	toProcess.push(from);
+	while(!toProcess.empty()) {
+		NodeTree<T>* node = toProcess.front();
+		toProcess.pop();
+		std::vector<NodeTree<T>*> children = node->getChildren();
+		for (int i = 0; i < children.size(); i++) {
+			if (children[i]->getData() == toCollapse) {
+				node->removeChild(children[i]);
+				std::vector<NodeTree<T>*> newChildren = children[i]->getChildren();
+				node->insertChildren(i,newChildren);
+				toProcess.push(node); //Do this node again
+			}
+			else
+				toProcess.push(children[i]);
+		}
+	}
+	return from;
+}