Move Cephelepod into deprecated_compiler, create captian.sh to handle bootstrapping kraken from backup or from Cephelepod

deprecated_compiler/include/GraphStructuredStack.h

@@ -0,0 +1,38 @@
+#include <iostream>
+#include <vector>
+#include <queue>
+#include <map>
+#include "NodeTree.h"
+#include "Symbol.h"
+#include "util.h"
+
+#ifndef GRAPH_STRUCTURED_STACK
+#define GRAPH_STRUCTURED_STACK
+
+class GraphStructuredStack {
+	public:
+		GraphStructuredStack();
+		~GraphStructuredStack();
+		NodeTree<int>* newNode(int stateNum);
+		void addToFrontier(int frontier, NodeTree<int>* node);
+		NodeTree<int>* inFrontier(int frontier, int state);
+		int getContainingFrontier(NodeTree<int>* node);
+		bool frontierIsEmpty(int frontier);
+		NodeTree<int>* frontierGetAccState(int frontier);
+		std::vector<NodeTree<int>*>* getReachable(NodeTree<int>* start, int lenght);
+		std::vector<std::vector<NodeTree<int>*> >* getReachablePaths(NodeTree<int>* start, int lenght);
+		void recursivePathFind(NodeTree<int>* start, int length, std::vector<NodeTree<int>*> currentPath, std::vector<std::vector<NodeTree<int>*> >* paths);
+		bool hasEdge(NodeTree<int>* start, NodeTree<int>* end);
+		NodeTree<Symbol>* getEdge(NodeTree<int>* start, NodeTree<int>* end);
+		void addEdge(NodeTree<int>* start, NodeTree<int>* end, NodeTree<Symbol>* edge);
+		void clear();
+
+        std::vector<int> getFrontier(int frontier);
+		std::string toString();
+	private:
+		std::vector<std::vector<NodeTree<int>*>*> gss;
+		std::map< std::pair< NodeTree<int>*, NodeTree<int>* >, NodeTree<Symbol>* > edges;
+        std::map< NodeTree<int>*, int > containing_frontier_map;
+};
+
+#endif